2024-25

FACED 2.0 enables large-scale voltage and calcium imaging in vivo

J Zhong, R G Natan, Q Zhang, J S J Wong, C Miehl, K Bose, X Lu, F St-Pierre, S Guo, B Doiron, K K Tsia, N Ji. (2025). Nature Methods.

Untangling stability and gain modulation in cortical circuits with multiple interneuron classes

H Bos, C Miehl, A M M Oswald, B Doiron. (2025). eLife 13: RP99808.

Between-area communication through the lens of within-area neuronal dynamics

O Gozel, B Doiron. (2024). Science Advances, 10: eadl6120.

Automated customization of large-scale spiking network models to neuronal population activity

S Wu, C Huang, A C Snyder, M A Smith, B Doiron, B M Yu. (2024). Nature Computational Science, 4: 690–705.

The mechanics of correlated variability in segregated cortical excitatory subnetworks

A Negrón, M P Getz, G Handy, B Doiron. (2024). PNAS, 121: e2306800121.

The logic of recurrent circuits in the primary visual cortex

I A Oldenburg, W D Hendricks, G Handy, K Shamardani, H A Bounds, B Doiron, H Adesnik. (2024). Nature Neuroscience, 27: 137–147.

2023

Cortical VIP neurons locally control the gain but globally control the coherence of gamma band rhythms

J Veit, G Handy, D Mossing, B Doiron, H Adesnik. (2023). Neuron, 111: 405-417. e5.

Cell-type-specific plasticity of inhibitory interneurons in the rehabilitation of auditory cortex after peripheral damage

M Kumar, G Handy, S Kouvaros, Y Zhao, L Brinson, E Wei, B Bizup, B Doiron, H Adesnik. (2023). Nature Communications, 14: 4170.

Sampling-based Bayesian inference in recurrent circuits of stochastic spiking neurons

WH Zhang, S Wu, K Josić, B Doiron. (2023). Nature Communications, 14: 7074.

2022

Internally generated population activity in cortical networks hinders information transmission

C Huang, A Pouget, B Doiron. (2022). Science Advances, 8: eabg5244.

A general decoding strategy explains the relationship between behavior and correlated variability

A Ni, C Huang, B Doiron, M Cohen. (2022). eLife, 11: e67258.

Large-scale neural recordings call for new insights to link brain and behavior

A Urai, B Doiron, A Leifer, A Churchland. (2022). Nature neuroscience, 25: 11-19.

2019-2021

Recurrent network dynamics shape direction selectivity in primary auditory cortex

D Aponte, G Handy, A Kline, H Tsukano, B Doiron, H Kato. (2021). Nature communications, 12: 1-15.

Bridging large-scale neuronal recordings and large-scale network models using dimensionality reduction

R Williamson, B Doiron, M Smith, B Yu. (2019). Current opinion in neurobiology, 55: 40-47.

Correlation Transfer by Layer 5 Cortical Neurons Under Recreated Synaptic Inputs In Vitro

D Linaro, G Ocker, B Doiron, M Giugliano. (2019). Journal of Neuroscience, 39: 7648-7663.

Training and Spontaneous Reinforcement of Neuronal Assemblies by Spike Timing Plasticity. G Ocker, B Doiron. (2018). Cerebral Cortex, 29: 937-951.
Once upon a (slow) time in the land of recurrent neuronal networks…. C Huang, B Doiron. (2017). Current opinion in neurobiology, 46: 31-38.
From the statistics of connectivity to the statistics of spike times in neuronal networks. G Ocker, Y Hu, M Buice, B Doiron, K Josić, R Rosenbaum, E Shea-Brown. (2017). Current opinion in neurobiology, 46: 109-119.
Attentional modulation of neuronal variability in circuit models of cortex. T Kanashiro, G Ocker, M Cohen, B Doiron. (2017). eLife, 6: e23978.
Population activity structure of excitatory and inhibitory neurons. S Bittner, R Williamson, A Snyder, A Litwin-Kumar, B Doiron, S Chase, M Smith, B Yu. (2017). PLOS One, 12: e0181773.
Noise-enhanced coding in phasic neuron spike trains. C Ly, B Doiron. (2017). PLOS One, 12: e0176963.
Decision Dynamics in Groups with Interacting Members. R Caginalp, B Doiron. (2017). SIAM Journal on Applied Dynamical Systems, 16: 1543-1562.
The spatial structure of correlated neuronal variability. R Rosenbaum, M Smith, A Kohn, J Rubin, B Doiron. (2017). Nature neuroscience, 20: 107-114.

Scaling Properties of Dimensionality Reduction for Neural Populations and Network Models. R Williamson, B Cowley, A Litwin-Kumar, B Doiron, A Kohn, M Smith, B Yu. (2016). PLoS computational biology, 12: e10051412.
The mechanics of state-dependent neural correlations. B Doiron, A Litwin-Kumar, R Rosenbaum, G Ocker, K Josić. (2016). Nature neuroscience, 19: 383-393.
Inhibitory stabilization and visual coding in cortical circuits with muliple interneuron subtypes. A Litwin-Kumar, R Rosenbaum, B Doiron. (2016). Journal of neurophysiology, 115: 1399-1409.
Self-Organization of Microcircuits in Networks of Spiking Neurons with Plastic Synapses. G Ocker, A Litwin-Kumar B Doiron. (2015). PLOS Computational Biology, 11: e1004458.

Formation and maintenance of neuronal assemblies through synaptic plasticity. A Litwin-Kumar, B Doiron. (2014). Nature communications, 5: 1-12.
Kv7 channels regulate pairwise spiking covariability in health and disease. G Ocker, B Doiron. (2014). Journal of neurophysiology, 112: 340-352.
Balanced Networks of Spiking Neurons with Spatially Dependent Recurrent Connections. R Rosenbaum, B Doiron. (2014). Physical Review X, 4: 021039.
Balanced neural architecture and the idling brain. B Doiron, A Litwin-Kumar. (2014). Frontiers in computational neuroscience, 8: 56.
Axonal and synaptic failure suppress the transfer of firing rate oscillations, synchrony and information during high frequency deep brain stimulation. R Rosenbaum, A Zimnik, F Zheng, R Turner, C Alzheimer, B Doiron, J Rubin. (2014). Neurobiology of disease, 62: 86-99.

Optimizing Working Memory with Heterogeneity of Recurrent Cortical Excitation. Z Kilpatrick, B Ermentrout, B Doiron. (2013). Journal of neuroscience, 33: 18999-19011.
Short-term synaptic depression and stochastic vesicle dynamics reduce and shape neuronal correlations. R Rosenbaum, J Rubin, B Doiron. (2013). Journal of neurophysiology, 109: 475-484.

Slow dynamics and high variability in balanced cortical networks with clustered connections. A Litwin-Kumar, B Doiron. (2012). Nature neuroscience, 15: 1498-1505.
The Spatial Structure of Stimuli Shapes the Timescale of Correlations in Population Spiking Activity. A Litwin-Kumar, M Chacron, B Doiron. (2012). PLOS Computational Biology, 8: e1002667.
Short Term Synaptic Depression Imposes a Frequency Dependent Filter on Synaptic Information Transfer. R Rosenbaum, J Rubin, B Doiron. (2012). PLOS Computational Biology, 8: e1002557.
Diverse levels of an inwardly rectifying potassium conductance generate heterogeneous neuronal behavior in a population of dorsal cochlear nucleus pyramidal neurons. R Leao, S Li, B Doiron, T Tzounopoulos. (2012). Journal of neurophysiology, 107: 3008-3019.
Correlated neural variability in persistent state networks. A Polk, A Litwin-Kumar, B Doiron. (2012). Proceedings of the National Academy of Sciences, 109: 6295-6300.
Cellular and circuit mechanisms maintain low spike co-variability and enhance population coding in somatosensory cortex. C Ly, J Middleton, B Doiron. (2012). Frontiers in computational neuroscience, 6: 7
Neural Correlation Is Stimulus Modulated by Feedforward Inhibitory Circuitry. J Middleton, C Omar, B Doiron, D Simons. (2012). Journal of Neuroscience, 32: 506-518.

Balanced Synaptic Input Shapes the Correlation between Neural Spike Trains. A Litwin-Kumar, AM Oswald, N Urban, B Doiron. (2011). PLoS computational biology, 7: e1002305.
Timescale-dependent shaping of correlation by olfactory bulb lateral inhibition. S Giridhar, B Doiron, N Urban. (2011). Proceedings of the National Academy of Sciences, 108: 5843-5848.
Correlation transfer from basal ganglia to thalamus in Parkinson’s disease. P Reitsma, B Doiron, J Rubin. (2011). Frontiers in Computational Neuroscience, 5.

Balancing organization and flexibility in foraging dynamics. M Tabone, B Ermentrout, B Doiron. (2010). Journal of theoretical biology, 266: 391-400.
Slope-Based Stochastic Resonance: How Noise Enables Phasic Neurons to Encode Slow Signals. Y Gai, B Doiron, J Rinzel. (2010). PLoS Computational Biology, 6: e1000825.

Noise-Gated Encoding of Slow Inputs by Auditory Brain Stem Neurons With a Low-Threshold K+ Current. Y Gai, B Doiron, V Kotak, J Rinzel. (2009). Journal of neurophysiology, 102: 3447-3460.
Stimulus-Dependent Correlations and Population Codes. K Josić, E Shea-Brown, B Doiron, J de la Rocha. (2009). Neural computation, 21: 2774-2804.
Spatial Profile and Differential Recruitment of GABAB Modulate Oscillatory Activity in Auditory Cortex. AM Oswald, B Doiron, J Rinzel, A Reyes. (2009). Journal of Neuroscience, 29: 10321-10334.
Feedback-induced gain control in stochastic spiking networks. C Sutherland, B Doiron, A Longtin. (2009). Biological cybernetics, 100: 475-489.
Divisive Gain Modulation with Dynamic Stimuli in Integrate-and-Fire Neurons. C Ly, B Doiron. (2009). PLoS computational biology, 5: e1000365.

Gamma Oscillations of Spiking Neural Populations Enhance Signal Discrimination. N Masuda, B Doiron. (2007). PLoS computational biology, 3: e236.
Correlation between neural spike trains increases with firing rate. J De La Rocha, B Doiron, E Shea-Brown, K Josić, A Reyes. (2007). Nature, 448: 802-806.
Interval Coding. II. Dendrite-Dependent Mechanisms. B Doiron, AM Oswald, L Maler. (2007). Journal of neurophysiology, 97: 2744-2757.
Interval Coding. I. Burst Interspike Intervals as Indicators of Stimulus Intensity. AM Oswald, B Doiron, L Maler. (2007). Journal of neurophysiology, 97: 2731-2743.

Towards blueprints for network architecture, biophysical dynamics and signal transduction. S Coombes, B Doiron, K Josić, E Shea-Brown. (2006). Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 364: 3301-3318.
Stochastic synchronization in finite size spiking networks. B Doiron, J Rinzel, A Reyes. (2006). Physical Review E, 74: 030903.

Theory of oscillatory firing induced by spatially correlated noise and delayed inhibitory feedback. B Lindner, B Doiron, A Longtin. (2005). Physical Review E, 72: 061919.
Deterministic Multiplicative Gain Control with Active Dendrites. W Mehaffey, B Doiron, L Maler, R Turner. (2005). Journal of Neuroscience, 25: 9968-9977.
Coding of Temporally Varying Signals in Networks of Spiking Neurons with Global Delayed Feedback. N Masuda, B Doiron, A Longtin, K Aihara. (2005). Neural computation, 17: 2139-2175.

Regulation of somatic firing dynamics by backpropagating dendritic spikes. W Mehaffey, F Fernandez, B Doiron, R Turner. (2008). Journal of Physiology-Paris, 102: 181-194.
Correlation and Synchrony Transfer in Integrate-and-Fire Neurons: Basic Properties and Consequences for Coding. E Shea-Brown, K Josić, J De La Rocha, B Doiron. (2008). Physical review letters, 100: 108102.
Subthreshold K+ Channel Dynamics Interact With Stimulus Spectrum to Influence Temporal Coding in an Auditory Brain Stem Model. M Day, B Doiron, J Rinzel. (2008). Journal of neurophysiology, 99: 534-544.

Oscillatory Activity in Electrosensory Neurons Increases with the Spatial Correlation of the Stochastic Input Stimulus. B Doiron, B Lindner, A Longtin, L Maler, J Bastian. (2004). Physical review letters, 93: 48101.
Parallel Processing of Sensory Input by Bursts and Isolated Spikes. AM Oswald, M Chacron, B Doiron, J Bastian, L Maler. (2004). Journal of Neuroscience, 24: 4351-4362.

Type I Burst Excitability. C Laing, B Doiron, A Longtin, L Noonan, R Turner, L Maler. (2003). Journal of computational neuroscience, 14: 329-342.
Non-classical receptive field mediates switch in a sensory neuron’s frequency tuning. M Chacron, B Doiron, L Maler, A Longtin, J Bastian. (2003). Nature, 423: 77-81.
A Dynamic Dendritic Refractory Period Regulates Burst Discharge in the Electrosensory Lobe of Weakly Electric Fish. L Noonan, B Doiron, C Laing, A Longtin, R Turner. (2003). Journal of Neuroscience, 23: 1524-1534.
Persistent Na+ Current Modifies Burst Discharge By Regulating Conditional Backpropagation of Dendritic Spikes. B Doiron, L Noonan, N Lemon, R Turner. (2003). Journal of neurophysiology, 89: 324-337.
Inhibitory feedback required for network oscillatory responses to communication but not prey stimuli. B Doiron, M Chacron, L Maler, A Longtin, J Bastian. (2003). Nature, 421: 539-543.

Noise-induced divisive gain control in neuron models. A Longtin, B Doiron, A Bulsara. (2002). Biosystems, 67: 147-156.
Oscillatory burst discharge generated through conditional backpropagation of dendritic spikes. R Turner, N Lemon, B Doiron, A Rashid, E Morales, A Longtin, L Maler, R Dunn. (2002). Journal of Physiology-Paris, 96: 517-530.
Ghostbursting: the effects of dendrites on spike patterns. C Laing, B Doiron, A Longtin, L Maler. (2002). Neurocomputing, 44: 127-132.
Ghostbursting: A Novel Neuronal Burst Mechanism. B Doiron, C Laing, A Longtin, L Maler. (2002). Journal of computational neuroscience, 12: 5-25.

Model of Gamma Frequency Burst Discharge Generated by Conditional Backpropagation. B Doiron, A Longtin, R Turner, L Maler. (2001). Journal of neurophysiology, 86: 1523-1545.
Subtractive and Divisive Inhibition: Effect of Voltage-Dependent Inhibitory Conductances and Noise. B Doiron, A Longtin, N Berman, L Maler. (2001). Neural computation, 13: 227-248.